Instytut Biochemii i Biofizyki Polskiej Akademii Nauk  Wydział Biologii Uniwersytetu Warszawskiego
Paweł Krawczyk, PhD

Paweł Krawczyk, PhD Bioinformatician

Paweł Krawczyk, PhD

Bioinformatician

email_krawczyk14
(+48) 22 592 5778
Room no. 029

 

Involved in: Bioinformatics, IT support, RNA Biology, Nanopore sequencing

Academic and Research Career:

Institute of Biochemistry and Biophysics Polish Academy of Sciences, 2010-2018
PhD Student, Laboratory of RNA Biology and Functional Genomics, advised by Andrzej Dziembowski

International Institute of Molecular and Cell Biology, Warsaw, 2008-2010
MSc Student, Laboratory of Molecular and Cell Neurobiology, advised by Jacek Jaworski

International Institute of Molecular and Cell Biology, Warsaw, 2006-2008
BSc Student, Laboratory of Molecular Biology, advised by Jakub Urbański and Maciej Żylicz

University of Warsaw, 2005-2010, Bsc and MSc student
College of Inter-Faculty Individual Studies in Mathematics and Natural Sciences, advised by Ewa Bartnik

ResearchGate profile
GitHub repository

Publications:

Uridylation by TUT4/7 Restricts Retrotransposition of Human LINE-1s.
Warkocki Z, Krawczyk PS, Adamska D, Bijata K, Garcia-Perez JL, Dziembowski A.
Cell. 2018 Sep 6;174(6):1537-1548.e29. doi: 10.1016/j.cell.2018.07.022. Epub 2018 Aug 16.

PlasFlow: predicting plasmid sequences in metagenomic data using genome signatures.
Krawczyk PS*, Lipinski L, Dziembowski A
Nucleic Acids Res. 2018 Jan 13; doi: 10.1093/nar/gkx1321
* – corresponding author

Versatile approach for functional analysis of human proteins and efficient stable cell line generation using FLP-mediated recombination system.
Szczesny RJ, Kowalska K, Klosowska-Kosicka K, Chlebowski A, Owczarek EP, Warkocki Z, Kulinski TM, Adamska D, Affek K, Jedroszkowiak A, Kotrys AV, Tomecki R, Krawczyk PS, Borowski LS, Dziembowski A.
PLoS One. 2018 Mar 28;13(3):e0194887. doi: 10.1371/journal.pone.0194887. eCollection 2018.

Adaptation of Methanogenic Inocula to Anaerobic Digestion of Maize Silage.
Wojcieszak M, Pyzik A, Poszytek K, Krawczyk PS, Sobczak A, Lipinski L, Roubinek O, Palige J, Sklodowska A, Drewniak L
Front Microbiol. 2017 Sep 28;8:1881. doi: 10.3389/fmicb.2017.01881. eCollection 2017.

Analysis of the Genome and Mobilome of a Dissimilatory Arsenate Reducing Aeromonas sp. O23A Reveals Multiple Mechanisms for Heavy Metal Resistance and Metabolism
Uhrynowski W, Decewicz P, Dziewit L, Radlinska M, Krawczyk PS, Lipinski L, Adamska D, Drewniak L.
Front Microbiol. 2017 May 29;8:936. doi: 10.3389/fmicb.2017.00936. eCollection 2017.

Physiological and Metagenomic Analyses of Microbial Mats Involved in Self-Purification of Mine Waters Contaminated with Heavy Metals
Drewniak L*, Krawczyk PS*, Mielnicki S, Adamska D, Sobczak A, Lipinski L, Burec-Drewniak W, Sklodowska A
Front Microbiol. 2016 Aug 10;7:1252. doi: 10.3389/fmicb.2016.01252. eCollection 2016.
* – equal contribution

Perlman syndrome nuclease DIS3L2 controls cytoplasmic non-coding RNAs and provides surveillance pathway for maturing snRNAs.
Łabno A, Warkocki Z, Kuliński T, Krawczyk PS, Bijata K, Tomecki R, Dziembowski A.
Nucleic Acids Res. 2016 Dec 1;44(21):10437-10453. Epub 2016 Jul 18

A new strategy for gene targeting and functional proteomics using the DT40 cell line.
Orlowska KP, Klosowska K, Szczesny RJ, Cysewski D, Krawczyk PS, Dziembowski A.
Nucleic Acids Res. 2013 Sep;41(17):e167.

Zipcode binding protein 1 regulates the development of dendritic arbors in hippocampal neurons.
Perycz M, Urbanska AS, Krawczyk PS, Parobczak K, Jaworski J.
J Neurosci. 2011 Apr 6;31(14):5271-85.

Awards:

3rd award for the best publication at the Institute of Biochemistry and Biophysics PAS in 2016 for the publication Perlman syndrome nuclease DIS3L2 controls cytoplasmic non-coding RNAs and provides surveillance pathway for maturing snRNAs.

2012 Preludium grant for young scientists (The National Science Centre). Project: “Metagenomic analysis of soil bacteria plasmids”

November 2009 Silver medal in the international Genetically Engineered Machine competition iGEM 2009 for the project: „BacInvader – a new system for cancer genetic therapy”

November 2008 Bronze medal in the international Genetically Engineered Machine competition iGEM 2008 for the project: „A novel system for generation and screening for new interactors targeted against any bait”